PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.178140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 180aa    MW: 21126 Da    PI: 7.7529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.178140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15854455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h e+Er+RR+++N++f+ Lr+++P+       +++Ka+ L  Av YI++L+
  Cucsa.178140.1  8 THVEAERQRREKLNDRFNSLRSVVPNV-----SRMDKASLLSDAVSYINELE 54
                    89************************6.....4****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.27E-11254No hitNo description
SuperFamilySSF474599.03E-18364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.549453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-19766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12854IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-141059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
KPENNPSTHV EAERQRREKL NDRFNSLRSV VPNVSRMDKA SLLSDAVSYI NELEMKISEM  60
ESRVLKEKKE KKNGVDENEM EEEASSRDRR ERGIEIDVKI IGGDRAVIRV ESRNLSYAVA  120
KLMEALRDLE LKVEHGSMWN LKDLTLQDLV VRFFHSFDAK SFRFSFRFDK ILINYYYYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818460.0LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441948.12e-93PREDICTED: transcription factor MYC4-like
SwissprotQ392049e-38MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0A0LKN81e-102A0A0A0LKN8_CUCSA; Uncharacterized protein
STRINGVIT_15s0048g02820.t019e-41(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2457733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-37bHLH family protein